head	1.2;
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	lisiecki:1.2; strict;
comment	@# @;


1.2
date	2003.11.30.00.44.28;	author lisiecki;	state Exp;
branches;
next	1.1;

1.1
date	2003.11.29.17.15.14;	author lisiecki;	state Exp;
branches;
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desc
@@


1.2
log
@Added gap-size multiplier.

Updated version/copyright info.

Added penalty component breakdown & removed defunct code.

Turned on memory-saving modulus feature.

Enabled compiler optimization.
@
text
@all: match_g

%: %.o
	c++ $^ -o $@@ $(LDFLAGS)

.cc.o:
#	c++ -c $< -o $@@ -Wall -g $(CFLAGS)
	c++ -O4 -c $< -o $@@ -Wall -g $(CFLAGS)

match_g: match_g.o config_g.o
match_g.o: match_g.cc config_g.hh series_g.hh
config_g.o: config_g.cc config_g.hh

clean: 
	rm -f *.o match_g *~ match_g.exe match.log *.new xmatch score_matrix

tar:
	tar -cz -C .. -f ../match-1.0.tgz match-1.0

# *.cc *.hh *.m *.conf *.dat Makefile \
#	    method.html method.txt *.pdf README.txt gpl.txt 
@


1.1
log
@Initial revision
@
text
@d7 2
a8 2
	c++ -c $< -o $@@ -Wall -g $(CFLAGS)
#	c++ -O4 -c $< -o $@@ -Wall -g $(CFLAGS)
@
